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Tagged under "Plants / germplasm"
Term definition:
Data on plants and crops, which may include repository information, cultivars, landraces, farmers' varieties, breeding lines, accessions, genetic stocks and other related material. May also relate to non-cultivated flora and fauna, such as invasive or threatened species.
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Displaying 1 - 50 of 54 (includes those tagged under sub-topics)
ABCD
The Access to Biological Collections Data (ABCD) Schema is an evolving comprehensive standard for the access to and exchange of data about specimens and observations (a.k.a. primary biodiversity data...
Publisher(s) / Maintainer(s):
Agricultural Model Intercomparison and Improvement Project (AgMIP)
Format used by AgMIP models: data are transferred into and out of the ACE and ACMO databases through the API using JSON objects, which consist of key:value pairs. Each key in a key:value pair...
CO_125
Publisher(s) / Maintainer(s):
Bioversity International
Ontology of the Banana Anatomy
In AgroPortal:
http://agroportal.lirmm.fr/ontologies/CO_125 CO_325
Publisher(s) / Maintainer(s):
CGIAR
CGIAR banana ontology beta version.
Publisher(s) / Maintainer(s):
United Nations Environment Programme (UNEP)
The BCH Thesaurus provides a pre-defined list of terms, related synonyms and translations used in the specific context of records registered with the Biosafety Clearing-House. It establishes the...
BAO
Publisher(s) / Maintainer(s):
National Centers for Biomedical Computing
The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO...
CO_338
Publisher(s) / Maintainer(s):
CGIAR
CGIAR Chickpea Ontology beta version
CBD Controlled Vocabulary
Publisher(s) / Maintainer(s):
Convention of Biological Diversity
"It facilitates searching and retrieving information by linking similar documents and on-line resources with unique terms. It standardizes descriptions, and so assists in efforts to make information...
Publisher(s) / Maintainer(s):
Bioversity International
The core descriptors for in situ conservation of Crop Wild Relatives are designed to facilitate the compilation and exchange of data, which are needed to develop and implement in situ conservation...
CO
Publisher(s) / Maintainer(s):
Generation Challenge Programme
Integrated Breeding Platform
The Crop Ontology project is the creation of the Generation Challenge Programme (GCP), which understood from its inception the importance of controlled vocabularies and ontologies for the digital...
CWR Ontology
Publisher(s) / Maintainer(s):
Food and Agriculture Organization of the United Nations (FAO)
The Ontology contains a subset of about 400 terms highly relevant to crop wild relatives. Terms with high relevance to CWR domain are grouped into themes, roughly corresponding to AGROVOC (top level...
DwC
Publisher(s) / Maintainer(s):
GBIF
Darwin Core (DwC) is a simple set of data element definitions designed to support the sharing and integration of primary biodiversity data. The DwC is a specification of data concepts and structure...
EOL
The EOL ontology describes environmental conditions of livestock breeding. It includes feeding modalities, the structure of breeding systems and their environment
CO_020
Publisher(s) / Maintainer(s):
Food and Agriculture Organization of the United Nations (FAO)
Bioversity International
FAO/IPGRI Multi-Crop Passport Descriptor formalized as an ontology. Adapted from FAO/Bioversity Multi-Crop Passport Descriptors, December 2015
MCPD V.2
Publisher(s) / Maintainer(s):
Food and Agriculture Organization of the United Nations (FAO)
Bioversity International
The FAO/Bioversity Multi-Crop Passport Descriptors (MCPD V.2) is the result of a thorough revision of the publication originally released by FAO/IPGRI in 2001, which has been widely used as the...
FOODON
FOODON is a new ontology built to interoperate with the OBO Library and to represent entities which bear a “food role”. It encompasses materials in natural ecosystems and food webs as well as human-...
CROPUSAGE
Publisher(s) / Maintainer(s):
Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
A thesaurus about crops cultivated in France. The hierarchy is based on the final destination of the crop (human food, animal breeding, food industry) and the cultivated system. The hierachy is not...
GENO
It is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class or any rank in the classification. Primarily...
GPC
Publisher(s) / Maintainer(s):
IOPI
Up to now, records from 6 major floristic datasets have been imported, as well as 7 specialized family datasets. With a total of 248400 source records, the GPC now covers 201,397 different plant...
Publisher(s) / Maintainer(s):
United States Department of Agriculture (USDA)
USDA manages the Germplasm Resources Information Network (GRIN): GRIN taxonomic data provide the structure and nomenclature for the accessions in the system. In GRIN Taxonomy all families and genera...
CO_337
Publisher(s) / Maintainer(s):
CGIAR
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)
CGIAR Groundnut Ontology beta version
CO_334
CGIAR Cassava Ontology
CO_340
Cowpea Trait Ontology
CO_715
Publisher(s) / Maintainer(s):
CGIAR
Bioversity International
International Maize and Wheat Improvement Center (CIMMYT)
Describes experimental design, environmental conditions and methods associated with the crop study/experiment/trail and their evaluation.
CO_320
Publisher(s) / Maintainer(s):
CGIAR
International Rice Research Institute (IRRI)
CGIAR rice trait ontology version 3. Compared with IRRI SES and trait ontology. Based from SES, Rice Descriptor and IRIS DB.
CO_121
Publisher(s) / Maintainer(s):
CGIAR
Defines growth stages of wheat
CO_321
Publisher(s) / Maintainer(s):
CGIAR
International Maize and Wheat Improvement Center (CIMMYT)
CIMMYT - Wheat - February 2016
ANT
Publisher(s) / Maintainer(s):
international Food Policy Research Institute (IFPRI)
The Agricultural and Nutrition Technology Ontology (ANT) was developed by the CGIAR to make it easier for organizations to access information on tested technologies that can improve smallholder...
Some relations
Publisher(s) / Maintainer(s):
School of Biological Sciences (University of Reading, UK)
Publisher(s) / Maintainer(s):
Integrated Taxonomic Information System
The ITIS includes documented taxonomic information of flora and fauna from both aquatic and terrestrial habitats. It contains information on plants, animals, fungi, and microbes of North America and...
Some relations
Publisher(s) / Maintainer(s):
National Agriculture Library
International Rice Research Institute (IRRI)
The thesaurus is a joint project of the IRRI Library and Documentation Service (LDS) and the Communication and Publications Services (CPS). It aims to make available standard terms used in rice...
CO_339
CGIAR Lentil Ontology beta version
LEXEAU
Lexique bilingue des textes et des données sur l'eau
In AgroPortal:
http://agroportal.lirmm.fr/ontologies/LEXEAU 
Listing includes over 4200 plant species.
CO_322
Maize Ontology
MeSH
Publisher(s) / Maintainer(s):
U.S. National Library of Medicine
MeSH is the National Library of Medicine's controlled vocabulary thesaurus. It consists of sets of terms naming descriptors in a hierarchical structure that permits searching at various levels of...
MMPND
The names of economic plants and their relatives. 70 most spoken languages in the world, 25 scripts
includes picture and pronunciation of the term, mainaintained by Kathie T. Hodge
OSCAR
Publisher(s) / Maintainer(s):
World Meteorological Organization
OSCAR is a resource developed by WMO in support of Earth Observation applications, studies and global coordination. It contains quantitative user-defined requirements for observation of physical...
CO_327
CGIAR Pearl Millet Ontology
PATO
Publisher(s) / Maintainer(s):
OBO Technical WG
Phenotypic qualities (properties). This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes. Examples of qualities are red, ectopic,...
CO_341
Publisher(s) / Maintainer(s):
CGIAR
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)
CGIAR Pigeon Pea ontology beta version
EO
Publisher(s) / Maintainer(s):
Plant Ontology Consortium
The Plant Environment Ontology describes the treatments,growing conditions, and/or study types used in various types of plant biology experiments. The subjects of the studies may also include in...
PO
Publisher(s) / Maintainer(s):
Plant Ontology Consortium
A non extensive collection of terms that describe structure and developmental stages of a plant. Arranged in a structured order/network based on the biological concept describing the term's...
PLAPHO
Publisher(s) / Maintainer(s):
Cyril Pommier
Domain ONtology for Phenotyping Experiments. Synchronized wih the Breeding API ( http://docs.brapi.apiary.io ) and MIAPPE compliant ( https://biosharing.org/bsg-000543 )
TO
Publisher(s) / Maintainer(s):
Planteome
A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant...
Data on plant varieties (botanical name (Latin name), common name, UPOV code and identification; information on its denomination).
SO
Publisher(s) / Maintainer(s):
The Gene Ontology Consortium
SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. SO was initially developed by the Gene Ontology Consortium. Contributors to SO...
CO_324
CGIAR Sorghum Ontology
SOY
Soybean Growth and Trait Ontology