The Animal Disease Ontology describes the characteristics and interrelations of production animals, diseases and their vectors. Regulatory statuses of diseases that are applicable in France and...
The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO...
A top-domain ontology that provides definitions for the foundational entities of biomedicine as a basic vocabulary to unambiguously describe facts in this domain.
The Cell Ontology is designed as a structured controlled vocabulary for cell types. This ontology was constructed for use by the model organism and other bioinformatics databases, where there is a...
A formalization of concepts and relations relevant to evolutionary comparative analysis, such as phylogenetic trees, OTUs (operational taxonomic units) and compared characters (including molecular...
Crop Vocabulary (CVO) is the core vocabulary of crop names to solve interoperability and machine-readability on crop names. Crop concepts in CVO are represented not only by organism names (“Cucumber...
Institut National de la Recherche Agronomique (INRA)
The durum wheat ontology (DURUM_WHEAT) is dedicated to the sustainability analysis of the durum wheat chain.Current data available on this ontology concern durum wheat quality criteria criteria used...
EDAM is an ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM is a...
EFSA has developed a standardised food classification and description system called FoodEx2 (version 2 of the EFSA Food classification and description system for exposure assessment). The system...
The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental variables in multiple resources at the EBI and the Centre for Therapeutic Target Validation. The...
Food and Agriculture Organization of the United Nations (FAO)
To promote consistency and comparability of information at the world level, FAO statistics provides national statistical offices with internationally recognized definitions, concepts and...
FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and...
Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
A thesaurus about crops cultivated in France. The hierarchy is based on the final destination of the crop (human food, animal breeding, food industry) and the cultivated system. The hierachy is not...
Direct support for the Gene Ontology Consortium is provided by an R01 grant from the National Human Genome Research Institute (NHGRI) [grant HG02273]; AstraZeneca; Incyte Genomics; the European Union...
It is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class or any rank in the classification. Primarily...
The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). It is captures the contents of...
It is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class or any rank in the classification. Primarily...
The IATI standard is a framework for publishing information on development cooperation activities in a timely, comprehensive and forward-looking manner. This site provides guidance, documentation and...
Phenotypic qualities (properties). This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes. Examples of qualities are red, ectopic,...
The Plant Environment Ontology describes the treatments,growing conditions, and/or study types used in various types of plant biology experiments. The subjects of the studies may also include in...
A non extensive collection of terms that describe structure and developmental stages of a plant. Arranged in a structured order/network based on the biological concept describing the term's...
Domain ONtology for Phenotyping Experiments. Synchronized wih the Breeding API ( http://docs.brapi.apiary.io ) and MIAPPE compliant ( https://biosharing.org/bsg-000543 )
A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant...
The Population and Community Ontology (PCO) models material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral...
PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a distinct class of entities (...
SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. SO was initially developed by the Gene Ontology Consortium. Contributors to SO...
SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses...
The SDGIO aims to provide a semantic bridge between 1) the Sustainable Development Goals, their targets, and indicators and 2) the large array of entities they refer to. It imports classes from...