Wheat Trait Ontology | Agrisemantics Map of Data Standards

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WheatPhenotype is an ontology of wheat traits and environmental factors that affect these traits. They include resistance to disease, development nutrition, bread quality, etc. Environmental factors include biotic and abiotic factors.

Form

Core information

URL(s):

https://doi.org/10.15454/1.4382637738008071E12

Publisher(s) / Maintainer(s):

Institut National de la Recherche Agronomique (INRA)

Domain(s):

Plant Science and Plant Products

Type of standard:

Ontology

Describes / models / annotates:

Phenotype and Trait

Additional information

Acronym:

WHEATPHENOTYPE

Other contributor(s):

Claire Nédellec

Thierry Marcel

Pierre Sourdille

Contact email:

claire.nedellec@inra.fr

License(s):

Creative Commons Attribution-ShareAlike

Status:

Usable, not broadly recognized

Technical information

Format of the data standard:

CSV, OBO Flat File, RDF/XML

Download / dump:

http://data.agroportal.lirmm.fr/ontologies/WHEATPHENOTYPE/submissions/4/download...

Link to machine-readable description:

http://genome.jouy.inra.fr/bibliome/WheatPhenotypeOntology/WheatPhenotypeOntolog...

Relations

Aligned / mapped to (link to vocabulary in the map):

Animal Disease Ontology, Experimental Factor Ontology, National Center for Biotechnology Information (NCBI) Organismal Classification, Plant Trait Ontology, Thesaurus for Animal Physiology and Livestock Systems

RDF vocabulary

RDF "language":

OBO

Number of classes:

466

Number of properties:

VEST / AgroPortal integration

Original source:

AgroPortal

Agroportal URI:

http://data.agroportal.lirmm.fr/ontologies/WHEATPHENOTYPE

Agroportal Web page:

http://agroportal.lirmm.fr/ontologies/WHEATPHENOTYPE

Assessment

An overview of criteria used for the assessment can be found here.

Total score:

1.94

assessment tabs

Fitness / adoption

Complete:

Fairly complete but needs complementary vocabularies

Authoritative:

Largely compatible:

Known:

Yes, moderately

Used in software:

Yes, in 1-2 tools

Used in datasets:

Yes, in a few

Discoverable:

Yes

Regulatory:

Endorsed:

Long-term, sustainable:

Yes, highly

Participatory, collaborative:

Maintained:

Yes

Scores

Avg fitness:

1.00

Avg adoption:

1.78

Usability / openness

Available on the web:

Yes

Versatile:

Yes, 2-3 similar formats

Served by APIs:

Yes, to get web- or user- friendly results

Yes, to lookup terms / concepts using several parameters

Yes, to automatically annotate text or data

Yes, to perform cross-walks between vocabularies

Manageable:

Documented:

Supported:

Yes

Testable:

Machine-readable:

Yes

Meaningful:

Yes

Annotated:

Yes

Referenceable:

Yes

Linked:

Yes

Clearly licensed:

Yes

Openly licensed:

Yes

Scores

Avg usability:

2.00

Avg openness:

3.00

Notes on assessment:

First technical assessment (usability / openness) made by: Agroknow.

URI: https://vest.agrisemantics.org/node/17608

RDF

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