Variation Ontology | Agrisemantics Map of Data Standards

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Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations.

Form

Core information

URL(s):

http://variationontology.org/

Publisher(s) / Maintainer(s):

Mauno Vihinen

Type of standard:

Ontology

Additional information

Acronym:

VARIO

Contact email:

mauno.vihinen@med.lu.se

Technical information

Format of the data standard:

CSV, OBO Flat File, RDF/XML

Namespace:

http://purl.obolibrary.org/obo/vario.owl

Download / dump:

http://data.agroportal.lirmm.fr/ontologies/VARIO/submissions/5/download?apikey=1...

Link to machine-readable description:

http://purl.obolibrary.org/obo/vario.owl

Relations

Aligned / mapped to (link to vocabulary in the map):

GENO Ontology, Semanticscience Integrated Ontology, Sequence Types and Features Ontology, Single-Nucleotide Polymorphism (SNP) Ontology

RDF vocabulary

RDF "language":

OBO

Number of classes:

390

Number of properties:

VEST / AgroPortal integration

Original source:

AgroPortal

Agroportal URI:

http://data.agroportal.lirmm.fr/ontologies/VARIO

Agroportal Web page:

http://agroportal.lirmm.fr/ontologies/VARIO

Assessment

An overview of criteria used for the assessment can be found here.

Total score:

2.14

assessment tabs

Fitness / adoption

Complete:

Fairly complete but needs complementary vocabularies

Authoritative:

Not clear - N/A

Largely compatible:

Yes

Known:

Yes, moderately

Used in software:

Yes, in a few tools

Used in datasets:

Not clear - N/A

Discoverable:

Yes

Regulatory:

Not clear - N/A

Endorsed:

Yes, moderately

Long-term, sustainable:

Not clear - N/A

Participatory, collaborative:

Not clear - N/A

Maintained:

Not clear - N/A

Scores

Avg fitness:

2.33

Avg adoption:

1.67

Usability / openness

Available on the web:

Yes

Versatile:

Yes, 2-3 similar formats

Served by APIs:

Yes, to get web- or user- friendly results

Yes, to lookup terms / concepts using several parameters

Yes, to automatically annotate text or data

Yes, to perform cross-walks between vocabularies

Manageable:

Yes, on specialized vocabulary management platform

Documented:

Not clear - N/A

Supported:

Not clear - N/A

Testable:

Not clear - N/A

Machine-readable:

Yes

Meaningful:

Yes

Annotated:

Not clear - N/A

Referenceable:

Yes

Linked:

Yes

Clearly licensed:

Not clear - N/A

Openly licensed:

Not clear - N/A

Scores

Avg usability:

2.43

Avg openness:

2.14

URI: https://vest.agrisemantics.org/node/17611

RDF

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