UniProt Taxonomy | Agrisemantics Map of Data Standards

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Organisms are classified in a hierarchical tree structure. UniProt taxonomy database contains every node (taxon) of the tree. UniProtKB taxonomy data is manually curated: next to manually verified organism names, UniProt taxonomy provide a selection of external links, organism strains and viral host information

Form

Core information

URL(s):

http://www.uniprot.org/taxonomy/

Publisher(s) / Maintainer(s):

UniProt consortium

Domain(s):

Organisms, [Peripheral / neighbouring domains]

Type of standard:

Taxonomy

Describes / models / annotates:

Organisms, Research and agronomic data

Additional information

Publication year:

2002

License(s):

Creative Commons Attribution-NoDerivs

Technical information

Format of the data standard:

RDF/XML

Download / dump:

ftp://ftp.uniprot.org/pub/databases/uniprot/current_release/rdf/core.owl

RDF vocabulary

RDF "language":

OWL

VEST / AgroPortal integration

Original source:

VEST Registry

Assessment

An overview of criteria used for the assessment can be found here.

Total score:

1.21

assessment tabs

Fitness / adoption

Complete:

Not clear - N/A

Authoritative:

Not clear - N/A

Largely compatible:

Not clear - N/A

Known:

Not clear - N/A

Used in software:

Not clear - N/A

Used in datasets:

Not clear - N/A

Discoverable:

Not clear - N/A

Regulatory:

Not clear - N/A

Endorsed:

Not clear - N/A

Long-term, sustainable:

Not clear - N/A

Participatory, collaborative:

Not clear - N/A

Maintained:

Not clear - N/A

Scores

Avg fitness:

1.00

Avg adoption:

1.00

Usability / openness

Available on the web:

Yes

Versatile:

Served by APIs:

Manageable:

Not clear - N/A

Documented:

Not clear - N/A

Supported:

Not clear - N/A

Testable:

Not clear - N/A

Machine-readable:

Yes

Meaningful:

Yes

Annotated:

Not clear - N/A

Referenceable:

Yes

Linked:

Not clear - N/A

Clearly licensed:

Not clear - N/A

Openly licensed:

Not clear - N/A

Scores

Avg usability:

1.00

Avg openness:

1.86

URI: https://vest.agrisemantics.org/node/20005

RDF

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