Semanticscience Integrated Ontology

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The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and informational entities. It provides vocabulary for the Bio2RDF (http://bio2rdf.org) and SADI (http://sadiframework.org) projects.

Form

Core information

URL(s):

http://sio.semanticscience.org/

Type of standard:

Ontology

Additional information

Acronym:

SIO

Other contributor(s):

Michel Dumontier (http://orcid.org/0000-0003-4727-9435)

Contact email:

michel.dumontier@gmail.com

Technical information

Format of the data standard:

CSV, OWL/XML, RDF/XML

Namespace:

http://semanticscience.org/ontology/sio.owl

Download / dump:

http://data.agroportal.lirmm.fr/ontologies/SIO/submissions/10/download?apikey=1d...

Link to machine-readable description:

http://semanticscience.org/ontology/sio.owl

RDF vocabulary

RDF "language":

OWL

Number of classes:

1522

Number of properties:

208

VEST / AgroPortal integration

Original source:

AgroPortal

Agroportal URI:

http://data.agroportal.lirmm.fr/ontologies/SIO

Agroportal Web page:

http://agroportal.lirmm.fr/ontologies/SIO

Assessment

An overview of criteria used for the assessment can be found here.

Total score:

2.14

assessment tabs

Fitness / adoption

Complete:

Fairly complete but needs complementary vocabularies

Authoritative:

Not clear - N/A

Largely compatible:

Yes

Known:

Yes, moderately

Used in software:

Yes, in a few tools

Used in datasets:

Not clear - N/A

Discoverable:

Yes

Regulatory:

Not clear - N/A

Endorsed:

Yes, moderately

Long-term, sustainable:

Not clear - N/A

Participatory, collaborative:

Not clear - N/A

Maintained:

Not clear - N/A

Scores

Avg fitness:

2.33

Avg adoption:

1.67

Usability / openness

Available on the web:

Yes

Versatile:

Yes, 2-3 similar formats

Served by APIs:

Yes, to get web- or user- friendly results

Yes, to lookup terms / concepts using several parameters

Yes, to automatically annotate text or data

Yes, to perform cross-walks between vocabularies

Manageable:

Yes, on specialized vocabulary management platform

Documented:

Not clear - N/A

Supported:

Not clear - N/A

Testable:

Not clear - N/A

Machine-readable:

Yes

Meaningful:

Yes

Annotated:

Not clear - N/A

Referenceable:

Yes

Linked:

Yes

Clearly licensed:

Not clear - N/A

Openly licensed:

Not clear - N/A

Scores

Avg usability:

2.43

Avg openness:

2.14

URI: https://vest.agrisemantics.org/node/17584

RDF

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Form

Relations

assessment tabs