Plant Ontology | Agrisemantics Map of Data Standards

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A non extensive collection of terms that describe structure and developmental stages of a plant. Arranged in a structured order/network based on the biological concept describing the term's relationship in an ontology tree.
International collaborative effort supported by primary funding (IOS:0822201 award) from the National Science Foundation of USA

Form

Core information

URL(s):

http://www.planteome.org

Publisher(s) / Maintainer(s):

Plant Ontology Consortium

Domain(s):

Plant Science and Plant Products

Type of standard:

Ontology

Describes / models / annotates:

Plant Anatomy and Development, Biodiversity and ecological data, Plants / germplasm, Research and agronomic data, Natural Resources, Earth and Environment data

Additional information

Acronym:

Contact email:

cooperl@science.oregonstate.edu

Publication year:

2008

License(s):

Creative Commons Attribution

Technical information

Format of the data standard:

CSV, OWL/XML, RDF/XML

Namespace:

http://purl.obolibrary.org/obo/po.owl

Other identifiers:

http://data.agroportal.lirmm.fr/ontologies/PO/submissions/3/download?apikey=1de0a270-29c5-4dda-b043-7c3580628cd5

Download / dump:

http://data.agroportal.lirmm.fr/ontologies/PO/submissions/6/download?apikey=1de0...

Link to machine-readable description:

http://purl.obolibrary.org/obo/po.owl

Web services:

http://plantontology.org/software/po_webservices

Relations

Aligned / mapped to (link to vocabulary in the map):

Environment Ontology, Experimental Factor Ontology, Gene Ontology, National Center for Biotechnology Information (NCBI) Organismal Classification, OntoBiotope, Banana Anatomy, Plant Trait Ontology

RDF vocabulary

RDF "language":

OWL

Number of classes:

1964

Number of properties:

VEST / AgroPortal integration

Original source:

AgroPortal

Agroportal URI:

http://data.agroportal.lirmm.fr/ontologies/PO

Agroportal Web page:

http://agroportal.lirmm.fr/ontologies/PO

Assessment

An overview of criteria used for the assessment can be found here.

Total score:

2.18

assessment tabs

Fitness / adoption

Complete:

Fairly complete but needs complementary vocabularies

Authoritative:

Not clear - N/A

Largely compatible:

Yes

Known:

Yes, moderately

Used in software:

Yes, in a few tools

Used in datasets:

Not clear - N/A

Discoverable:

Yes

Regulatory:

Not clear - N/A

Endorsed:

Yes, moderately

Long-term, sustainable:

Not clear - N/A

Participatory, collaborative:

Not clear - N/A

Maintained:

Not clear - N/A

Scores

Avg fitness:

2.33

Avg adoption:

1.67

Usability / openness

Available on the web:

Yes

Versatile:

Yes, 2-3 similar formats

Served by APIs:

Yes, to get web- or user- friendly results

Yes, to lookup terms / concepts using several parameters

Yes, to automatically annotate text or data

Yes, to perform cross-walks between vocabularies

Manageable:

Documented:

Yes

Supported:

Yes

Testable:

Machine-readable:

Yes

Meaningful:

Yes

Annotated:

Yes

Referenceable:

Yes

Linked:

Yes

Clearly licensed:

Openly licensed:

Not clear - N/A

Scores

Avg usability:

2.43

Avg openness:

2.29

Notes on assessment:

First technical assessment (usability / openness) made by: Agroknow.

URI: https://vest.agrisemantics.org/node/18704

RDF

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