| Name | Domain / data types | Type, formats |
|---|---|---|
|
Agriculture Activity Ontology Sungmin Joo, Hideaki Takeda, Daisuke Horyu, Takezaki Akane |
Agricultural Research, Technology and Engineering Farm management data, Research and agronomic data, Value chain data, Socio-economic data Agriculture Activity Ontology(AAO) is the basis of the core vocabulary of agriculture activity, and it provides semantics for agricultural activity... more |
Ontology |
|
Country and Location CGIAR |
Geospatial and geopolitical domain Geospatial data / objects Describes official ISO 3166-1 alpha-2, alpha-3 and numeric country codes along with location names. more |
Ontology CSV, OBO Flat File, RDF/XML |
|
Durum Wheat Institut National de la Recherche Agronomique (INRA) |
The durum wheat ontology (DURUM_WHEAT) is dedicated to the sustainability analysis of the durum wheat chain.Current data available on this ontology... more |
Ontology CSV, OWL/XML, RDF/XML |
|
EDAM bioinformatics operations, data types, formats, identifiers and topics EDAM Core Developers |
EDAM is an ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers,... more |
Ontology CSV, RDF/XML |
|
Environment Ontology Envo Administrators, Wheat Data Interoperability Working Group |
Natural Resources, Earth and Environment Natural Resources, Earth and Environment data, Biodiversity and ecological data Ontology of environmental features and habitats more |
Ontology CSV, OBO Flat File, RDF/XML |
|
Experimental Factor Ontology The European Bioinformatics Institute (EMBL-EBI) |
The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental variables in multiple resources at the EBI and... more |
Ontology CSV, OWL/XML, RDF/XML |
|
FAO-IPGRI Multi-Crop Passport Ontology Food and Agriculture Organization of the United Nations (FAO), Bioversity International |
Plant Science and Plant Products Plants / germplasm, Research and agronomic data FAO/IPGRI Multi-Crop Passport Descriptor formalized as an ontology. Adapted from FAO/Bioversity Multi-Crop Passport Descriptors, December 2015 more |
Ontology CSV, OBO Flat File, RDF/XML |
| Feature Annotation Location Description Ontology | FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in... more |
Ontology CSV, OWL/XML, RDF/XML |
|
French Crop Usage Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA) |
Plant Science and Plant Products Plants / germplasm, Research and agronomic data A thesaurus about crops cultivated in France. The hierarchy is based on the final destination of the crop (human food, animal breeding, food industry... more |
Ontology CSV, RDF/XML |
| GENO Ontology |
Research and agronomic data, Plants / germplasm, General Germplasm, Phenotype and Trait, Plant Anatomy and Development It is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class... more |
Ontology CSV, OWL/XML, RDF/XML |
|
Genomic Feature and Variation Ontology CODAMONO |
The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data... more |
Ontology CSV, OWL/XML, RDF/XML |
|
Groundnut Ontology CGIAR, International Crops Research Institute for the Semi-Arid Tropics (ICRISAT) |
Plant Science and Plant Products Phenotype and Trait, Plants / germplasm, Research and agronomic data CGIAR Groundnut Ontology beta version more |
Ontology CSV, OWL/XML, RDF/XML |
|
IBP Crop Research Ontology CGIAR, Bioversity International, International Maize and Wheat Improvement Center (CIMMYT) |
Agricultural Research, Technology and Engineering, Plant Science and Plant Products Agronomic data, agricultural technologies, Plants / germplasm, Research and agronomic data Describes experimental design, environmental conditions and methods associated with the crop study/experiment/trail and their evaluation. more |
Ontology CSV, OBO Flat File, RDF/XML |
|
IBP Rice Trait Ontology CGIAR, International Rice Research Institute (IRRI) |
Plant Science and Plant Products Phenotype and Trait, Plants / germplasm, Research and agronomic data CGIAR rice trait ontology version 3. Compared with IRRI SES and trait ontology. Based from SES, Rice Descriptor and IRIS DB. more |
Ontology CSV, OWL/XML, RDF/XML |
|
IBP Wheat Anatomy and Development Ontology CGIAR |
Plant Science and Plant Products Plant Anatomy and Development, Plants / germplasm, Research and agronomic data Defines growth stages of wheat more |
Ontology CSV, OBO Flat File, RDF/XML |
|
IBP Wheat Trait Ontology CGIAR, International Maize and Wheat Improvement Center (CIMMYT) |
Plant Science and Plant Products Phenotype and Trait, Plants / germplasm, Research and agronomic data CIMMYT - Wheat - February 2016 more |
Ontology CSV, OWL/XML, RDF/XML |
| Population and Community Ontology |
Organisms, [Peripheral / neighbouring domains] Biodiversity and ecological data, Natural Resources, Earth and Environment data The Population and Community Ontology (PCO) models material entities, qualities, and processes related to collections of interacting organisms such... more |
Ontology CSV, OWL/XML, RDF/XML |
|
Process and Observation Ontology Institut National de la Recherche Agronomique (INRA) |
Agricultural Research, Technology and Engineering Agronomic data, agricultural technologies, Biodiversity and ecological data, Research and agronomic data, Natural Resources, Earth and Environment data A core ontology for modeling transformation processes and their observations. more |
Ontology CSV, OWL/XML, RDF/XML |
|
Semantic Types Ontology US National Library of Medicine |
UMLS semantic types ontology. 2015AA version. more |
Ontology CSV, Turtle, UMLS (RRF, ORF) |
| Semanticscience Integrated Ontology | The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge... more |
Ontology CSV, OWL/XML, RDF/XML |
|
TaxonConcept editor Peter J. DeVries |
TaxonConcept.org is a Linked Open Data site providing Semantic Web identifiers for species concepts.The TaxonConcept Knowledge Base provides... more | Taxonomy |
|
Variation Ontology Mauno Vihinen |
Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations. more |
Ontology CSV, OBO Flat File, RDF/XML |
| XEML Environment Ontology | XeO has been created to help plant scientists in documenting and sharing metadata describing the abiotic environment. more |
Ontology CSV, OBO Flat File, OWL/XML, RDF/XML |
