Tagged under "CSV"

Term definition: 
Seriialization format. See IANA Media Types::http://www.iana.org/assignments/media-types/
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Displaying 1 - 50 of 53 (includes those tagged under sub-topics)

The Animal Disease Ontology describes the characteristics and interrelations of production animals, diseases and their vectors. Regulatory statuses of diseases that are applicable in France and...
Publisher(s) / Maintainer(s): 
National Centers for Biomedical Computing
The BioAssay Ontology (BAO) describes chemical biology screening assays and their results including high-throughput screening (HTS) data for the purpose of categorizing assays and data analysis. BAO...
A top-domain ontology that provides definitions for the foundational entities of biomedicine as a basic vocabulary to unambiguously describe facts in this domain.
Publisher(s) / Maintainer(s): 
OBO Technical WG
The Cell Ontology is designed as a structured controlled vocabulary for cell types. This ontology was constructed for use by the model organism and other bioinformatics databases, where there is a...
Publisher(s) / Maintainer(s): 
CDAO team
A formalization of concepts and relations relevant to evolutionary comparative analysis, such as phylogenetic trees, OTUs (operational taxonomic units) and compared characters (including molecular...
Publisher(s) / Maintainer(s): 
CGIAR
Describes official ISO 3166-1 alpha-2, alpha-3 and numeric country codes along with location names.
Publisher(s) / Maintainer(s): 
Institut National de la Recherche Agronomique (INRA)
The durum wheat ontology (DURUM_WHEAT) is dedicated to the sustainability analysis of the durum wheat chain.Current data available on this ontology concern durum wheat quality criteria criteria used...
Publisher(s) / Maintainer(s): 
EDAM Core Developers
EDAM is an ontology of well established, familiar concepts that are prevalent within bioinformatics, including types of data and data identifiers, data formats, operations and topics. EDAM is a...
EFSA has developed a standardised food classification and description system called FoodEx2 (version 2 of the EFSA Food classification and description system for exposure assessment). The system...
Publisher(s) / Maintainer(s): 
Envo Administrators
Wheat Data Interoperability Working Group
Ontology of environmental features and habitats
Publisher(s) / Maintainer(s): 
The European Bioinformatics Institute (EMBL-EBI)
The Experimental Factor Ontology (EFO) is an application focused ontology modelling the experimental variables in multiple resources at the EBI and the Centre for Therapeutic Target Validation. The...
Publisher(s) / Maintainer(s): 
Food and Agriculture Organization of the United Nations (FAO)
Bioversity International
FAO/IPGRI Multi-Crop Passport Descriptor formalized as an ontology. Adapted from FAO/Bioversity Multi-Crop Passport Descriptors, December 2015
Publisher(s) / Maintainer(s): 
Food and Agriculture Organization of the United Nations (FAO)
To promote consistency and comparability of information at the world level, FAO statistics provides national statistical offices with internationally recognized definitions, concepts and...
FALDO is the Feature Annotation Location Description Ontology. It is a simple ontology to describe sequence feature positions and regions as found in GFF3, DBBJ, EMBL, GenBank files, UniProt, and...
Publisher(s) / Maintainer(s): 
Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
A thesaurus about crops cultivated in France. The hierarchy is based on the final destination of the crop (human food, animal breeding, food industry) and the cultivated system. The hierachy is not...
Publisher(s) / Maintainer(s): 
The Gene Ontology Consortium
Direct support for the Gene Ontology Consortium is provided by an R01 grant from the National Human Genome Research Institute (NHGRI) [grant HG02273]; AstraZeneca; Incyte Genomics; the European Union...
It is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class or any rank in the classification. Primarily...
Publisher(s) / Maintainer(s): 
CODAMONO
The Genomic Feature and Variation Ontology (GFVO) is modeled to represent genomic data using the Resource Description Format (RDF) or Linked Data using JSON (JSON-LD). It is captures the contents of...
Publisher(s) / Maintainer(s): 
Gramene
It is a representation of the taxonomy tree in the ontology format. Each term in this ontology can represent subspecies, species, genus, order, class or any rank in the classification. Primarily...
Publisher(s) / Maintainer(s): 
CGIAR
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)
CGIAR Groundnut Ontology beta version
Publisher(s) / Maintainer(s): 
CGIAR
Bioversity International
International Maize and Wheat Improvement Center (CIMMYT)
Describes experimental design, environmental conditions and methods associated with the crop study/experiment/trail and their evaluation.
Publisher(s) / Maintainer(s): 
CGIAR
International Rice Research Institute (IRRI)
CGIAR rice trait ontology version 3. Compared with IRRI SES and trait ontology. Based from SES, Rice Descriptor and IRIS DB.
Publisher(s) / Maintainer(s): 
The Land Portal Foundation
LandVoc is the standardized vocabulary for concepts relating to land governance, curated by the Land Portal Foundation.
Publisher(s) / Maintainer(s): 
National Center for Biotechnology Information (NCBI)
The NCBI Taxonomy Database is a curated classification and nomenclature for all of the organisms in the public sequence databases.
Publisher(s) / Maintainer(s): 
Institut National de la Recherche Agronomique (INRA)
The OntoBiotope Ontology describes all types of microorganism biotopes.
Publisher(s) / Maintainer(s): 
OBO Technical WG
Phenotypic qualities (properties). This ontology can be used in conjunction with other ontologies such as GO or anatomical ontologies to refer to phenotypes. Examples of qualities are red, ectopic,...
Publisher(s) / Maintainer(s): 
CGIAR
International Crops Research Institute for the Semi-Arid Tropics (ICRISAT)
CGIAR Pigeon Pea ontology beta version
Publisher(s) / Maintainer(s): 
Plant Ontology Consortium
The Plant Environment Ontology describes the treatments,growing conditions, and/or study types used in various types of plant biology experiments. The subjects of the studies may also include in...
Publisher(s) / Maintainer(s): 
Plant Ontology Consortium
A non extensive collection of terms that describe structure and developmental stages of a plant. Arranged in a structured order/network based on the biological concept describing the term's...
Publisher(s) / Maintainer(s): 
Cyril Pommier
Domain ONtology for Phenotyping Experiments. Synchronized wih the Breeding API ( http://docs.brapi.apiary.io ) and MIAPPE compliant ( https://biosharing.org/bsg-000543 )
Publisher(s) / Maintainer(s): 
Planteome
A controlled vocabulary to describe phenotypic traits in plants. Each trait is a distinguishable feature, characteristic, quality or phenotypic feature of a developing or mature plant, or a plant...
The Population and Community Ontology (PCO) models material entities, qualities, and processes related to collections of interacting organisms such as populations and communities. It is taxon neutral...
Publisher(s) / Maintainer(s): 
Protein Ontology Consortium
PRO provides an ontological representation of protein-related entities by explicitly defining them and showing the relationships between them. Each PRO term represents a distinct class of entities (...
The semanticscience integrated ontology (SIO) provides a simple, integrated upper level ontology (types, relations) for consistent knowledge representation across physical, processual and...
Publisher(s) / Maintainer(s): 
The Gene Ontology Consortium
SO is a collaborative ontology project for the definition of sequence features used in biological sequence annotation. SO was initially developed by the Gene Ontology Consortium. Contributors to SO...
Publisher(s) / Maintainer(s): 
Adrien Coulet
SNP-Ontology is a domain ontology that provides a formal representation (OWL-DL) of genomic variations. Despite its name, SNP-Ontology, is not limited to the representation of SNPs but it encompasses...
Publisher(s) / Maintainer(s): 
Institut National de la Recherche Agronomique (INRA)
TriPhase is a large thesaurus in the domain of animal physiology and livestock designed by INRA.
Publisher(s) / Maintainer(s): 
Semantica Trd. Ltd. Co
The Scientific and Technological Research Council of Turkey (TUBITAK)
We built food ontology primarily to support comparative effectiveness researchers studying food components or ingredients data. Food Ontology Knowledgebase (FOKB) is developed in English and Turkish...
Publisher(s) / Maintainer(s): 
USDA Nutrient Data Laboratory (NDL)
United States Department of Agriculture (USDA)
The USDA National Nutrient Database for Standard Reference (SR) is the major source of food composition data in the United States. It provides the foundation for most food composition databases in...
Publisher(s) / Maintainer(s): 
Mauno Vihinen
Variation Ontology, VariO, is an ontology for standardized, systematic description of effects, consequences and mechanisms of variations.